TOP2A

associated omics data
DNA topoisomerase II alphaGenealiases: TOP2 · TOP2alpha · TOPIIA · TP2A

Q-omics provides the consensus-scored TOP2A profile across patient tissues and cancer cell-line models. TOP2A expression is associated with patient survival in 26 of 34 cancer types, with the highest sampling consensus in KIRP. Among the 18 cancer types available for tumor–normal comparison, TOP2A is differentially expressed in 16, with the highest sampling consensus in HNSC. Additionally, TOP2A protein abundance shows 32,860 significant protein co-abundance associations, with the highest sampling consensus in LSCC. Together, these results highlight KIRP, HNSC, and LSCC as cancer lineages where TOP2A shows reproducible signals across survival, tumor–normal expression, and patient cross-omics analyses.

Every result is evaluated using two consensus scores. Sampling consensus measures how consistently a finding is reproduced within a cancer lineage across different conditions. Lineage consensus measures how broadly the result is shared across cancer types, distinguishing pan-cancer signals from lineage-specific patterns.

Survival associations

This table summarizes TOP2A survival associations across molecular data types. TOP2A RNA expression shows survival associations in the most cancer types (26), followed by mutation status (9) and mass-spec protein abundance (9). The rightmost column indicates the cancer type with the highest sampling consensus for each molecular layer.
TOP2A data typeSurvival analysisLineage consensusLineage of highest sampling consensus
RNAKaplan–Meier26KIRP (164)view →
MutationKaplan–Meier9LUAD (47)view →
Protein (mass-spec)Kaplan–Meier9PDAC (73)view →
This table ranks reproducible TOP2A RNA expression–survival associations across cancer types. High TOP2A expression shows unfavorable associations in KIRP, MESO, ACC, LIHC, KICH and PAAD. The KIRP Kaplan–Meier curve shows clear separation, with the high-expression group declining faster, consistent with the unfavorable association (log-rank p < 0.001). Together, the overview and detailed table identify KIRP as the clearest survival context for TOP2A RNA expression.
LineageMeasureSplitStageAUC1
high
AUC2
low
pSampling consensus
KIRPDFSMedianAll0.7610.940<.001164view →
MESOOSMedianAll0.3600.715<.001141view →
ACCDFSMedianAll0.2340.642<.001137view →
LIHCDFSMedianAll0.4470.634<.00193view →
KICHOSTertileIII,IV0.2531.000.00188view →
PAADOSMedianAll0.2650.546<.00178view →
Pink = unfavorable, green = favorable. all 26 lineages →

TOP2A-KIRP (DFS)

Kaplan–Meier survival curve for TOP2A RNA expression in KIRP: high vs low expression groups.

Explore this curve interactively →

Tumor vs Normal expression

This table summarizes TOP2A tumor–normal expression differences by data type. RNA shows broader differences across cancer types, with a lineage consensus of 16, while mass-spec protein shows differences in 8. The strongest signals are observed in HNSC for RNA and COAD for protein.
TOP2A data typeExpression analysisLineage consensusLineage of highest sampling consensus
RNABox plot16HNSC (12)view →
Protein (mass-spec)Box plot8COAD (12)view →
This table ranks reproducible tumor–normal expression differences for TOP2A. A negative fold-change indicates higher expression in normal tissue than in tumor tissue. TOP2A shows higher tumor expression in HNSC, BLCA, LUAD, KIRP, KIRC and THCA. The HNSC box plot shows higher TOP2A RNA expression in tumor versus normal tissue (log2 FC = +2.294, t-test p < 0.001).
LineageGenderStageFold-changepSampling consensus
HNSCMaleAll+2.294<.00112view →
BLCAMaleIV+5.127<.00111view →
LUADMaleIII,IV+4.511<.00111view →
KIRPAllIV+4.420<.00111view →
KIRCMaleAll+2.284<.00111view →
THCAAllIII,IV+1.381<.00110view →
Green = repressed in tumor. all 16 lineages →

TOP2A-HNSC

Tumor-vs-normal expression box plot for TOP2A in HNSC.

Explore this plot interactively →

Cross-omics associations

This table shows molecular features associated with TOP2A in patient tissues and cancer cell lines. In patient samples, TOP2A shows the broadest associations at the RNA and protein expression levels, with LSCC recurring as the lineage with the largest associated feature set. In cancer cell lines, TOP2A RNA and mutation anchors are most strongly linked to RNA-expression features, especially in SOFT_TISSUE, while CRISPR and shRNA rows add functional-dependency signals in BLOOD_Leukemia and LARGE_INTESTINE.
Associated data typeStrength (# associated data)Lineage of highest associated data
Protein (mass-spec)
Protein (mass-spec)32,860LSCC (13349)view →
RNA20,544LSCC (11163)view →
RNA
Protein (mass-spec)27,252LSCC (12237)view →
RNA19,290ACC (7910)view →
Mutation
RNA2,912UCEC (2400)view →
Protein (RPPA)51UCEC (49)view →
Associated data typeStrength (# associated data)Lineage of highest associated data
CRISPR
CRISPR1,866SOFT_TISSUE (201)view →
RNA1,843SOFT_TISSUE (388)view →
RNA
RNA10,380BLOOD_Leukemia (5901)view →
Function (RNA)4,518BLOOD_Leukemia (2123)view →
Mutation
Mutation7,127LARGE_INTESTINE (4978)view →
RNA425LARGE_INTESTINE (393)view →
Protein (mass-spec)
RNA4,035BLOOD_Leukemia (1886)view →
Function (mass-spec)1,790BONE (408)view →