RCC1

associated omics data
regulator of chromosome condensation 1Genealiases: CHC1 · IIAAN · RCC1-I

Q-omics provides the consensus-scored RCC1 profile across patient tissues and cancer cell-line models. RCC1 expression is associated with patient survival in 29 of 34 cancer types, with the highest sampling consensus in KIRP. Among the 18 cancer types available for tumor–normal comparison, RCC1 is differentially expressed in 17, with the highest sampling consensus in BLCA. Additionally, RCC1 protein abundance shows 24,042 significant protein co-abundance associations, with the highest sampling consensus in GBM. Together, these results highlight KIRP, BLCA, and GBM as cancer lineages where RCC1 shows reproducible signals across survival, tumor–normal expression, and patient cross-omics analyses.

Every result is evaluated using two consensus scores. Sampling consensus measures how consistently a finding is reproduced within a cancer lineage across different conditions. Lineage consensus measures how broadly the result is shared across cancer types, distinguishing pan-cancer signals from lineage-specific patterns.

Survival associations

This table summarizes RCC1 survival associations across molecular data types. RCC1 RNA expression shows survival associations in the most cancer types (29), followed by mutation status (5) and mass-spec protein abundance (8). The rightmost column indicates the cancer type with the highest sampling consensus for each molecular layer.
RCC1 data typeSurvival analysisLineage consensusLineage of highest sampling consensus
RNAKaplan–Meier29KIRP (148)view →
Protein (mass-spec)Kaplan–Meier8CCRCC (27)view →
MutationKaplan–Meier5LIHC (18)view →
This table ranks reproducible RCC1 RNA expression–survival associations across cancer types. High RCC1 expression shows unfavorable associations in KIRP, ACC, LIHC, KICH, LGG and SARC. The KIRP Kaplan–Meier curve shows clear separation, with the high-expression group declining faster, consistent with the unfavorable association (log-rank p < 0.001). Together, the overview and detailed table identify KIRP as the clearest survival context for RCC1 RNA expression.
LineageMeasureSplitStageAUC1
high
AUC2
low
pSampling consensus
KIRPOSMedianAll0.5820.783<.001148view →
ACCOSMedianAll0.7810.957<.00199view →
LIHCOSMedianAll0.5990.762<.00198view →
KICHDFSMedianIII,IV0.3080.942.00181view →
LGGDFSMedianAll0.6640.816<.00154view →
SARCDFSMedianAll0.5040.714<.00152view →
Pink = unfavorable, green = favorable. all 29 lineages →

RCC1-KIRP (OS)

Kaplan–Meier survival curve for RCC1 RNA expression in KIRP: high vs low expression groups.

Explore this curve interactively →

Tumor vs Normal expression

This table summarizes RCC1 tumor–normal expression differences by data type. RNA shows broader differences across cancer types, with a lineage consensus of 17, while mass-spec protein shows differences in 7. The strongest signals are observed in KIRC for RNA and CCRCC for protein.
RCC1 data typeExpression analysisLineage consensusLineage of highest sampling consensus
RNABox plot17KIRC (11)view →
Protein (mass-spec)Box plot7CCRCC (11)view →
This table ranks reproducible tumor–normal expression differences for RCC1. A negative fold-change indicates higher expression in normal tissue than in tumor tissue. RCC1 shows higher tumor expression in BLCA, LUAD, KIRP, COAD, KIRC and HNSC. The BLCA box plot shows higher RCC1 RNA expression in tumor versus normal tissue (log2 FC = +2.065, t-test p < 0.001).
LineageGenderStageFold-changepSampling consensus
BLCAMaleIII,IV+2.065<.00111view →
LUADMaleIII,IV+1.766<.00111view →
KIRPAllII,III,IV+1.741<.00111view →
COADFemaleII,III,IV+1.468<.00111view →
KIRCMaleIV+1.135<.00111view →
HNSCMaleAll+0.958<.00111view →
Green = repressed in tumor. all 17 lineages →

RCC1-BLCA

Tumor-vs-normal expression box plot for RCC1 in BLCA.

Explore this plot interactively →

Cross-omics associations

This table shows molecular features associated with RCC1 in patient tissues and cancer cell lines. In patient samples, RCC1 shows the broadest associations at the RNA and protein expression levels, with GBM recurring as the lineage with the largest associated feature set. In cancer cell lines, RCC1 RNA and mutation anchors are most strongly linked to RNA-expression features, especially in LARGE_INTESTINE, while CRISPR and shRNA rows add functional-dependency signals in OESOPHAGUS and BLOOD_Leukemia.
Associated data typeStrength (# associated data)Lineage of highest associated data
Protein (mass-spec)
Protein (mass-spec)24,042GBM (8495)view →
RNA13,767LUAD (4057)view →
RNA
Protein (mass-spec)21,156LSCC (7434)view →
RNA18,522ACC (9526)view →
Mutation
RNA443UCEC (330)view →
Protein (RPPA)10UCEC (10)view →
Associated data typeStrength (# associated data)Lineage of highest associated data
CRISPR
CRISPR2,245LARGE_INTESTINE (233)view →
RNA1,620OESOPHAGUS (194)view →
RNA
RNA11,362BLOOD_Leukemia (5316)view →
Function (RNA)4,816BLOOD_Lymphoma (1923)view →
Protein (mass-spec)
RNA3,405SKIN (547)view →
Function (mass-spec)2,168OVARY (609)view →
shRNA
RNA2,129SOFT_TISSUE (442)view →
shRNA1,747SKIN (295)view →