PPT1

associated omics data
palmitoyl-protein thioesterase 1Genealiases: CLN1 · INCL · PPT

Q-omics provides the consensus-scored PPT1 profile across patient tissues and cancer cell-line models. PPT1 expression is associated with patient survival in 23 of 34 cancer types, with the highest sampling consensus in KIRC. Among the 18 cancer types available for tumor–normal comparison, PPT1 is differentially expressed in 13, with the highest sampling consensus in HNSC. Additionally, PPT1 RNA expression shows 19,735 significant gene co-expression associations, with the highest sampling consensus in UVM. Together, these results highlight KIRC, HNSC, and UVM as cancer lineages where PPT1 shows reproducible signals across survival, tumor–normal expression, and patient cross-omics analyses.

Every result is evaluated using two consensus scores. Sampling consensus measures how consistently a finding is reproduced within a cancer lineage across different conditions. Lineage consensus measures how broadly the result is shared across cancer types, distinguishing pan-cancer signals from lineage-specific patterns.

Survival associations

This table summarizes PPT1 survival associations across molecular data types. PPT1 RNA expression shows survival associations in the most cancer types (23), followed by mutation status (2) and mass-spec protein abundance (7). The rightmost column indicates the cancer type with the highest sampling consensus for each molecular layer.
PPT1 data typeSurvival analysisLineage consensusLineage of highest sampling consensus
RNAKaplan–Meier23KIRC (103)view →
Protein (mass-spec)Kaplan–Meier7COAD (90)view →
MutationKaplan–Meier2STAD (27)view →
This table ranks reproducible PPT1 RNA expression–survival associations across cancer types. High PPT1 expression shows unfavorable associations in LIHC, MESO, ACC and LGG, but favorable associations in KIRC and LUAD. The KIRC Kaplan–Meier curve shows clear separation, with the low-expression group declining faster, consistent with the favorable association (log-rank p < 0.001). Together, the overview and detailed table identify KIRC as the clearest survival context for PPT1 RNA expression.
LineageMeasureSplitStageAUC1
high
AUC2
low
pSampling consensus
KIRCDFSMedianAll0.7100.541<.001103view →
LIHCOSTertileAll0.5670.764<.00179view →
MESOOSQuartileAll0.2090.517<.00176view →
ACCDFSQuartileAll0.2400.809<.00163view →
LUADDFSQuartileAll0.8650.728.00239view →
LGGDFSMedianAll0.6770.806<.00129view →
Pink = unfavorable, green = favorable. all 23 lineages →

PPT1-KIRC (DFS)

Kaplan–Meier survival curve for PPT1 RNA expression in KIRC: high vs low expression groups.

Explore this curve interactively →

Tumor vs Normal expression

This table summarizes PPT1 tumor–normal expression differences by data type. RNA shows broader differences across cancer types, with a lineage consensus of 13, while mass-spec protein shows differences in 6. The strongest signals are observed in KIRC for RNA and LUAD for protein.
PPT1 data typeExpression analysisLineage consensusLineage of highest sampling consensus
RNABox plot13KIRC (12)view →
Protein (mass-spec)Box plot6LUAD (8)view →
This table ranks reproducible tumor–normal expression differences for PPT1. A negative fold-change indicates higher expression in normal tissue than in tumor tissue. PPT1 shows lower tumor expression in KICH and LUAD and higher tumor expression in HNSC, KIRC, COAD and LIHC. The HNSC box plot shows higher PPT1 RNA expression in tumor versus normal tissue (log2 FC = +1.513, t-test p < 0.001).
LineageGenderStageFold-changepSampling consensus
HNSCFemaleIII,IV+1.513<.00112view →
KIRCFemaleIII,IV+0.729<.00112view →
KICHFemaleII,III,IV−2.308<.00111view →
COADAllII,III,IV+0.715<.0018view →
LIHCFemaleII,III,IV+1.248<.0017view →
LUADAllII,III,IV−0.514<.0017view →
Green = repressed in tumor. all 13 lineages →

PPT1-HNSC

Tumor-vs-normal expression box plot for PPT1 in HNSC.

Explore this plot interactively →

Cross-omics associations

This table shows molecular features associated with PPT1 in patient tissues and cancer cell lines. In patient samples, PPT1 shows the broadest associations at the RNA and protein expression levels, with UVM recurring as the lineage with the largest associated feature set. In cancer cell lines, PPT1 RNA and mutation anchors are most strongly linked to RNA-expression features, especially in SKIN, while CRISPR and shRNA rows add functional-dependency signals in LUNG_SCLC and LARGE_INTESTINE.
Associated data typeStrength (# associated data)Lineage of highest associated data
RNA
RNA19,735UVM (8816)view →
Protein (mass-spec)10,333UCEC (1784)view →
Protein (mass-spec)
Protein (mass-spec)16,515GBM (6700)view →
RNA6,916GBM (3090)view →
Mutation
RNA243UCEC (216)view →
Protein (RPPA)12UCEC (12)view →
Associated data typeStrength (# associated data)Lineage of highest associated data
CRISPR
CRISPR1,889SKIN (154)view →
RNA1,408LUNG_SCLC (255)view →
RNA
RNA11,175LARGE_INTESTINE (2907)view →
Function (RNA)4,074BLOOD_Leukemia (1127)view →
Protein (mass-spec)
RNA4,956BLOOD_Lymphoma (1899)view →
Function (RNA)2,497BLOOD_Lymphoma (1056)view →
shRNA
RNA2,417SKIN (674)view →
shRNA1,883SKIN (409)view →