GO:0031000Ontology (GO BP)GO biological process · ~15 member genes
Q-omics provides the Response to caffeine (GO:0031000) pathway profile, scoring each patient from the combined activity of its roughly 15 member genes. Pathway activity is associated with patient survival in 23 of 34 cancer types, with the highest sampling consensus in UVM. Among the 18 cancer types available for tumor–normal comparison, the pathway is differentially active in 10, with the highest sampling consensus in LIHC. Additionally, pathway RNA activity shows 31,908 significant cross-omics associations, again with the highest sampling consensus in HNSC. Together, these results highlight UVM, LIHC, and HNSC as cancer lineages where the pathway shows reproducible signals across outcome, tissue activity, and molecular association analyses.
Every result is evaluated using two consensus scores. Sampling consensus measures how consistently a finding is reproduced within a cancer lineage across different conditions. Lineage consensus measures how broadly the result is shared across cancer types, distinguishing pan-cancer signals from lineage-specific patterns. Pathway-against-pathway and pathway-against-mutation comparisons are not available for ontology entities.
Survival associations
This table summarizes Response to caffeine survival associations by molecular data type. RNA-level pathway activity shows survival associations in the most cancer types (23). The rightmost column indicates the cancer type with the highest sampling consensus for each layer.
This table ranks reproducible pathway activity–survival associations across cancer types. High Response to caffeine activity shows favorable associations in UVM, but unfavorable associations in SKCM, LGG, UCEC, LIHC and ACC. In the UVM Kaplan–Meier curve the low-activity group declines faster, consistent with the favorable association (log-rank p < 0.001). UVM ranks highest by sampling consensus for Response to caffeine.
This table summarizes Response to caffeine tumor–normal activity differences by data type. RNA-level activity shows significant tumor–normal differences in 10 cancer types, while mass-spec protein activity shows differences in 4. The strongest signals are in LIHC for RNA and PDAC for protein.
This table ranks reproducible tumor–normal activity differences for the pathway. A positive fold-change indicates higher activity in tumor tissue. The pathway shows higher tumor activity across LIHC, LUSC, LUAD and COAD and lower tumor activity in KIRC and BRCA. In the LIHC box plot, tumor samples show higher pathway activity than matched normal samples (log2 FC = +0.037, t-test p < 0.001).
This table shows molecular features associated with Response to caffeine pathway activity in patient tissues and cancer cell lines. In patient samples, pathway activity is most strongly linked to RNA and protein features, with the largest associated set in HNSC. In cancer cell lines, RNA-expression features and functional dependencies dominate, with the largest set in URINARY_TRACT.
