GO:0002251Ontology (GO BP)GO biological process · ~42 member genes
Q-omics provides the Organ or tissue specific immune response (GO:0002251) pathway profile, scoring each patient from the combined activity of its roughly 42 member genes. Pathway activity is associated with patient survival in 20 of 34 cancer types, with the highest sampling consensus in KIRP. Among the 18 cancer types available for tumor–normal comparison, the pathway is differentially active in 14, with the highest sampling consensus in KIRC. Additionally, pathway RNA activity shows 33,038 significant cross-omics associations, again with the highest sampling consensus in KIRP. Together, these results highlight KIRP, and KIRC as cancer lineages where the pathway shows reproducible signals across outcome, tissue activity, and molecular association analyses.
Every result is evaluated using two consensus scores. Sampling consensus measures how consistently a finding is reproduced within a cancer lineage across different conditions. Lineage consensus measures how broadly the result is shared across cancer types, distinguishing pan-cancer signals from lineage-specific patterns. Pathway-against-pathway and pathway-against-mutation comparisons are not available for ontology entities.
Survival associations
This table summarizes Organ or tissue specific immune response survival associations by molecular data type. RNA-level pathway activity shows survival associations in the most cancer types (20). The rightmost column indicates the cancer type with the highest sampling consensus for each layer.
This table ranks reproducible pathway activity–survival associations across cancer types. High Organ or tissue specific immune response activity shows favorable associations in KIRP, MESO, STAD and LIHC, but unfavorable associations in LGG and SKCM. In the KIRP Kaplan–Meier curve the low-activity group declines faster, consistent with the favorable association (log-rank p < 0.001). KIRP ranks highest by sampling consensus for Organ or tissue specific immune response.
This table summarizes Organ or tissue specific immune response tumor–normal activity differences by data type. RNA-level activity shows significant tumor–normal differences in 14 cancer types, while mass-spec protein activity shows differences in 4. The strongest signals are in KIRC for RNA and CCRCC for protein.
This table ranks reproducible tumor–normal activity differences for the pathway. A positive fold-change indicates higher activity in tumor tissue. The pathway shows higher tumor activity across UCEC and BRCA and lower tumor activity in KIRC, KIRP, LUSC and HNSC. In the KIRC box plot, normal samples show higher pathway activity than tumor samples (log2 FC = −0.081, t-test p < 0.001).
This table shows molecular features associated with Organ or tissue specific immune response pathway activity in patient tissues and cancer cell lines. In patient samples, pathway activity is most strongly linked to RNA and protein features, with the largest associated set in KIRP. In cancer cell lines, RNA-expression features and functional dependencies dominate, with the largest set in PANCREAS.
