OPCML-IT2

associated omics data
OPCML intronic transcript 2Genealiases: []

Q-omics provides the consensus-scored OPCML-IT2 profile across patient tissues and cancer cell-line models. OPCML-IT2 expression is associated with patient survival in 9 of 34 cancer types, with the highest sampling consensus in THYM. Among the 18 cancer types available for tumor–normal comparison, OPCML-IT2 is differentially expressed in 1, with the highest sampling consensus in BRCA. Additionally, OPCML-IT2 RNA expression shows 10,514 significant protein co-abundance associations, with the highest sampling consensus in GBM. Together, these results highlight THYM, BRCA, and GBM as cancer lineages where OPCML-IT2 shows reproducible signals across survival, tumor–normal expression, and patient cross-omics analyses.

Every result is evaluated using two consensus scores. Sampling consensus measures how consistently a finding is reproduced within a cancer lineage across different conditions. Lineage consensus measures how broadly the result is shared across cancer types, distinguishing pan-cancer signals from lineage-specific patterns.

Survival associations

This table summarizes OPCML-IT2 survival associations across molecular data types. OPCML-IT2 RNA expression shows survival associations in the most cancer types (9). The rightmost column indicates the cancer type with the highest sampling consensus for each molecular layer.
OPCML-IT2 data typeSurvival analysisLineage consensusLineage of highest sampling consensus
RNAKaplan–Meier9THYM (72)view →
This table ranks reproducible OPCML-IT2 RNA expression–survival associations across cancer types. High OPCML-IT2 expression shows unfavorable associations in THYM, CESC, KICH, OV, LUSC and KIRP. The THYM Kaplan–Meier curve shows clear separation, with the high-expression group declining faster, consistent with the unfavorable association (log-rank p < 0.001). Together, the overview and detailed table identify THYM as the clearest survival context for OPCML-IT2 RNA expression.
LineageMeasureSplitStageAUC1
high
AUC2
low
pSampling consensus
THYMOSTertileAll0.0680.977<.00172view →
CESCOSTertileIV0.0910.593<.00136view →
KICHDFSTertileII,III,IV0.0350.860<.00136view →
OVOSTertileII,III,IV0.4150.694.01336view →
LUSCOSTertileAll0.3500.728.02127view →
KIRPOSTertileAll0.2160.904<.00127view →
Pink = unfavorable, green = favorable. all 9 lineages →

OPCML-IT2-THYM (OS)

Kaplan–Meier survival curve for OPCML-IT2 RNA expression in THYM: high vs low expression groups.

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Tumor vs Normal expression

This table summarizes OPCML-IT2 tumor–normal expression differences by data type. RNA shows broader differences across cancer types, with a lineage consensus of 1. The strongest signals are observed in BRCA for RNA.
OPCML-IT2 data typeExpression analysisLineage consensusLineage of highest sampling consensus
RNABox plot1BRCA (2)view →
This table ranks reproducible tumor–normal expression differences for OPCML-IT2. A negative fold-change indicates higher expression in normal tissue than in tumor tissue. OPCML-IT2 shows higher tumor expression in BRCA. The BRCA box plot shows higher OPCML-IT2 RNA expression in tumor versus normal tissue (log2 FC = +0.045, t-test p = .048).
LineageGenderStageFold-changepSampling consensus
BRCAAllAll+0.045.0482view →
Green = repressed in tumor. all 1 lineages →

OPCML-IT2-BRCA

Tumor-vs-normal expression box plot for OPCML-IT2 in BRCA.

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Cross-omics associations

This table shows molecular features associated with OPCML-IT2 in patient tissues and cancer cell lines. In patient samples, OPCML-IT2 shows the broadest associations at the RNA and protein expression levels, with GBM recurring as the lineage with the largest associated feature set.
Associated data typeStrength (# associated data)Lineage of highest associated data
RNA
Protein (mass-spec)10,514GBM (6454)view →
RNA7,330BRCA (3143)view →