GO:0090257Ontology (GO BP)GO biological process · ~240 member genes
Q-omics provides the Regulation of muscle system process (GO:0090257) pathway profile, scoring each patient from the combined activity of its roughly 240 member genes. Pathway activity is associated with patient survival in 22 of 34 cancer types, with the highest sampling consensus in SCLC. Among the 18 cancer types available for tumor–normal comparison, the pathway is differentially active in 11, with the highest sampling consensus in KIRP. Additionally, pathway RNA activity shows 36,616 significant cross-omics associations, again with the highest sampling consensus in STAD. Together, these results highlight SCLC, KIRP, and STAD as cancer lineages where the pathway shows reproducible signals across outcome, tissue activity, and molecular association analyses.
Every result is evaluated using two consensus scores. Sampling consensus measures how consistently a finding is reproduced within a cancer lineage across different conditions. Lineage consensus measures how broadly the result is shared across cancer types, distinguishing pan-cancer signals from lineage-specific patterns. Pathway-against-pathway and pathway-against-mutation comparisons are not available for ontology entities.
Survival associations
This table summarizes Regulation of muscle system process survival associations by molecular data type. RNA-level pathway activity shows survival associations in the most cancer types (22). The rightmost column indicates the cancer type with the highest sampling consensus for each layer.
This table ranks reproducible pathway activity–survival associations across cancer types. High Regulation of muscle system process activity shows favorable associations in ESCA and BRCA, but unfavorable associations in SCLC, LIHC, MESO and OV. In the SCLC Kaplan–Meier curve the high-activity group declines faster, consistent with the unfavorable association (log-rank p = .001). SCLC ranks highest by sampling consensus for Regulation of muscle system process.
This table summarizes Regulation of muscle system process tumor–normal activity differences by data type. RNA-level activity shows significant tumor–normal differences in 11 cancer types. The strongest signals are in KIRP for RNA.
This table ranks reproducible tumor–normal activity differences for the pathway. A positive fold-change indicates higher activity in tumor tissue. The pathway shows consistently lower tumor activity across KIRP, COAD, KICH, BLCA, LUSC and UCEC. In the KIRP box plot, normal samples show higher pathway activity than tumor samples (log2 FC = −0.029, t-test p < 0.001).
This table shows molecular features associated with Regulation of muscle system process pathway activity in patient tissues and cancer cell lines. In patient samples, pathway activity is most strongly linked to RNA and protein features, with the largest associated set in STAD. In cancer cell lines, RNA-expression features and functional dependencies dominate, with the largest set in OVARY.
