GO:0060052Ontology (GO BP)GO biological process · ~10 member genes
Q-omics provides the Neurofilament cytoskeleton organization (GO:0060052) pathway profile, scoring each patient from the combined activity of its roughly 10 member genes. Pathway activity is associated with patient survival in 21 of 34 cancer types, with the highest sampling consensus in BLCA. Among the 18 cancer types available for tumor–normal comparison, the pathway is differentially active in 8, with the highest sampling consensus in THCA. Additionally, pathway RNA activity shows 32,854 significant cross-omics associations, again with the highest sampling consensus in THCA. Together, these results highlight BLCA, and THCA as cancer lineages where the pathway shows reproducible signals across outcome, tissue activity, and molecular association analyses.
Every result is evaluated using two consensus scores. Sampling consensus measures how consistently a finding is reproduced within a cancer lineage across different conditions. Lineage consensus measures how broadly the result is shared across cancer types, distinguishing pan-cancer signals from lineage-specific patterns. Pathway-against-pathway and pathway-against-mutation comparisons are not available for ontology entities.
Survival associations
This table summarizes Neurofilament cytoskeleton organization survival associations by molecular data type. RNA-level pathway activity shows survival associations in the most cancer types (21). The rightmost column indicates the cancer type with the highest sampling consensus for each layer.
This table ranks reproducible pathway activity–survival associations across cancer types. High Neurofilament cytoskeleton organization activity shows favorable associations in BLCA, CESC and LGG, but unfavorable associations in THYM, MESO and SKCM. In the BLCA Kaplan–Meier curve the low-activity group declines faster, consistent with the favorable association (log-rank p = .004). BLCA ranks highest by sampling consensus for Neurofilament cytoskeleton organization.
This table summarizes Neurofilament cytoskeleton organization tumor–normal activity differences by data type. RNA-level activity shows significant tumor–normal differences in 8 cancer types, while mass-spec protein activity shows differences in 5. The strongest signals are in THCA for RNA and COAD for protein.
This table ranks reproducible tumor–normal activity differences for the pathway. A positive fold-change indicates higher activity in tumor tissue. The pathway shows higher tumor activity across COAD, HNSC, BLCA and READ and lower tumor activity in THCA and BRCA. In the THCA box plot, normal samples show higher pathway activity than tumor samples (log2 FC = −0.132, t-test p < 0.001).
This table shows molecular features associated with Neurofilament cytoskeleton organization pathway activity in patient tissues and cancer cell lines. In patient samples, pathway activity is most strongly linked to RNA and protein features, with the largest associated set in THCA. In cancer cell lines, RNA-expression features and functional dependencies dominate, with the largest set in LUNG_SCLC.
