RAPGEF4-AS1

RNA expression — cross-omics
Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RAPGEF4-AS1 RNA expression is significantly associated with the protein abundance of many other proteins, with 10,705 significant associations in total. GBM shows the largest number of these associations.

The most reproducible RAPGEF4-AS1-associated proteins across cancer lineages are WIZ, SMC4, and KDM3A. Each is linked with RAPGEF4-AS1 in more than 3 cancer types. Because this analysis shows association rather than direction, both RAPGEF4-AS1-to-partner and partner-to-RAPGEF4-AS1 results are reported.

Each partner links to its own Q-omics profile.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (RAPGEF4-AS1→partner) and Y-score (partner→RAPGEF4-AS1) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
GBMWIZ →+0.299+0.487.001<.00134
GBMSMC4 →+0.592+0.451.001.00434
LSCCKDM3A →+0.445+0.539<.001<.00134
HNSCZNF185_S153 →-1.099-0.546<.001.00233
GBMUBA2 →+0.324+0.446<.001.00133
HNSCUPP1 →-0.862-0.378<.001.00633
Each partner links to its Q-omics profile. Showing the 6 strongest of 10,705 associations by consensus.

Exploration