LSAMP-AS1

Across TCGA patient cohorts, LSAMP-AS1 RNA expression is significantly associated with the protein abundance of many other proteins, with 11,797 significant associations in total. GBM shows the largest number of these associations.

The most reproducible LSAMP-AS1-associated proteins across cancer lineages are LSAMP, HDGFL3, and NUMBL. Each is linked with LSAMP-AS1 in more than 3 cancer types. Because this analysis shows association rather than direction, both LSAMP-AS1-to-partner and partner-to-LSAMP-AS1 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LSAMP-AS1 versus LSAMP in HNSC, with a Pearson correlation of 0.65.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (LSAMP-AS1→partner) and Y-score (partner→LSAMP-AS1) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
HNSC	LSAMP →	+0.669	+1.046	<.001	<.001	3	4
LUAD	HDGFL3 →	+0.560	+0.616	<.001	<.001	3	4
PDAC	NUMBL →	+0.248	+0.554	<.001	<.001	3	3
LUAD	PDE3A_S312 →	+0.641	+0.573	<.001	<.001	3	3
PDAC	S100A8 →	-1.032	-0.472	.006	.009	3	3
HNSC	SCAF8 →	+0.187	+1.112	.001	.004	3	3

Each partner links to its Q-omics profile. Showing the 6 strongest of 11,797 associations by consensus.

LSAMP-AS1 vs LSAMP — HNSC

Explore this scatter interactively →