Across TCGA patient cohorts, LINC00643 mutation is significantly associated with the RNA expression of many other genes, with 57 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible LINC00643-associated genes across cancer lineages are CICP28, FXNP2, and RN7SL140P. Each is linked with LINC00643 in more than 1 cancer types. Because this analysis shows association rather than direction, both LINC00643-to-partner and partner-to-LINC00643 results are reported.

Each partner links to its own Q-omics profile.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00643→partner) and Y-score (partner→LINC00643) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
UCEC	CICP28 →	+0.028	+3.351	.002	.003	3	1
UCEC	FXNP2 →	+0.265	+3.039	.002	.005	3	1
UCEC	RN7SL140P →	+0.122	+3.997	.009	.009	3	1
UCEC	RNU6-737P →	+0.220	+4.137	.002	.008	3	1
UCEC	RNU6-1 →	+0.668	+3.100	.002	.004	3	1
UCEC	RNU1-3 →	+0.538	+4.137	<.001	.008	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 57 associations by consensus.

Exploration

LINC00643 survival (RNA) · tumor vs normal (RNA) · all LINC00643 data types