CLRN1

associated omics data
clarin 1Genealiases: RP61 · USH3 · USH3A

Q-omics provides the consensus-scored CLRN1 profile across patient tissues and cancer cell-line models. CLRN1 expression is associated with patient survival in 17 of 34 cancer types, with the highest sampling consensus in BRCA. Among the 18 cancer types available for tumor–normal comparison, CLRN1 is differentially expressed in 4, with the highest sampling consensus in KIRC. Additionally, CLRN1 RNA expression shows 6,528 significant pathway-activity associations, with the highest sampling consensus in STAD. Together, these results highlight BRCA, KIRC, and STAD as cancer lineages where CLRN1 shows reproducible signals across survival, tumor–normal expression, and patient cross-omics analyses.

Every result is evaluated using two consensus scores. Sampling consensus measures how consistently a finding is reproduced within a cancer lineage across different conditions. Lineage consensus measures how broadly the result is shared across cancer types, distinguishing pan-cancer signals from lineage-specific patterns.

Survival associations

This table summarizes CLRN1 survival associations across molecular data types. CLRN1 RNA expression shows survival associations in the most cancer types (17), followed by mutation status (5). The rightmost column indicates the cancer type with the highest sampling consensus for each molecular layer.
CLRN1 data typeSurvival analysisLineage consensusLineage of highest sampling consensus
RNAKaplan–Meier17BRCA (94)view →
MutationKaplan–Meier5LIHC (12)view →
This table ranks reproducible CLRN1 RNA expression–survival associations across cancer types. High CLRN1 expression shows unfavorable associations in MESO, COAD, BLCA, LGG and HNSC, but favorable associations in BRCA. The BRCA Kaplan–Meier curve shows clear separation, with the low-expression group declining faster, consistent with the favorable association (log-rank p < 0.001). Together, the overview and detailed table identify BRCA as the clearest survival context for CLRN1 RNA expression.
LineageMeasureSplitStageAUC1
high
AUC2
low
pSampling consensus
BRCADFSTertileIII,IV0.9190.716<.00194view →
MESODFSTertileAll0.2390.438.00242view →
COADDFSTertileIII,IV0.5170.693.00542view →
BLCADFSTertileIV0.2920.491.01527view →
LGGOSTertileAll0.7210.835.00124view →
HNSCDFSTertileII,III,IV0.3990.584.03124view →
Pink = unfavorable, green = favorable. all 17 lineages →

CLRN1-BRCA (DFS)

Kaplan–Meier survival curve for CLRN1 RNA expression in BRCA: high vs low expression groups.

Explore this curve interactively →

Tumor vs Normal expression

This table summarizes CLRN1 tumor–normal expression differences by data type. RNA shows broader differences across cancer types, with a lineage consensus of 4. The strongest signals are observed in KIRC for RNA.
CLRN1 data typeExpression analysisLineage consensusLineage of highest sampling consensus
RNABox plot4KIRC (9)view →
This table ranks reproducible tumor–normal expression differences for CLRN1. A negative fold-change indicates higher expression in normal tissue than in tumor tissue. CLRN1 shows higher tumor expression in KIRC, BRCA, LIHC and CHOL. The KIRC box plot shows higher CLRN1 RNA expression in tumor versus normal tissue (log2 FC = +0.017, t-test p < 0.001).
LineageGenderStageFold-changepSampling consensus
KIRCFemaleAll+0.017<.0019view →
BRCAAllAll+0.117.0164view →
LIHCAllII,III,IV+0.010.0113view →
CHOLAllAll+0.018.0321view →
Green = repressed in tumor. all 4 lineages →

CLRN1-KIRC

Tumor-vs-normal expression box plot for CLRN1 in KIRC.

Explore this plot interactively →

Cross-omics associations

This table shows molecular features associated with CLRN1 in patient tissues and cancer cell lines. In patient samples, CLRN1 shows the broadest associations at the RNA and protein expression levels, with STAD recurring as the lineage with the largest associated feature set. In cancer cell lines, CLRN1 RNA and mutation anchors are most strongly linked to RNA-expression features, especially in PANCREAS, while CRISPR and shRNA rows add functional-dependency signals in LUNG_NSCLC_LUSC and LUNG_SCLC.
Associated data typeStrength (# associated data)Lineage of highest associated data
RNA
Function (RNA)6,528STAD (5153)view →
RNA6,334TGCT (3365)view →
Mutation
RNA1,144UCEC (731)view →
Protein (RPPA)24UCEC (15)view →
Associated data typeStrength (# associated data)Lineage of highest associated data
CRISPR
CRISPR1,640PANCREAS (132)view →
shRNA1,132LUNG_NSCLC_LUSC (96)view →
shRNA
RNA1,712LUNG_NSCLC_LUSC (311)view →
shRNA1,696LUNG_SCLC (223)view →
RNA
RNA851LUNG_NSCLC_LUSC (313)view →
Mutation89LUNG_NSCLC_LUAD (29)view →
Mutation
Mutation130BLOOD_Leukemia (73)view →