CCDC28A-AS1

Across TCGA patient cohorts, CCDC28A-AS1 RNA expression is significantly associated with the protein abundance of many other proteins, with 10,629 significant associations in total. LSCC shows the largest number of these associations.

The most reproducible CCDC28A-AS1-associated proteins across cancer lineages are VTA1, ARID1B, and HDAC2. Each is linked with CCDC28A-AS1 in more than 5 cancer types. Because this analysis shows association rather than direction, both CCDC28A-AS1-to-partner and partner-to-CCDC28A-AS1 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, CCDC28A-AS1 versus VTA1 in GBM, with a Pearson correlation of 0.37.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (CCDC28A-AS1→partner) and Y-score (partner→CCDC28A-AS1) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
GBM	VTA1 →	+0.324	+0.343	<.001	<.001	3	6
LSCC	ARID1B →	+0.264	+0.507	<.001	<.001	3	5
GBM	HDAC2 →	+0.351	+0.331	.002	.006	3	5
GBM	MED23 →	+0.236	+0.388	.001	.002	3	5
LSCC	CDC5L →	+0.287	+0.559	<.001	<.001	3	4
LSCC	DDX56 →	+0.225	+0.358	.005	.003	3	4

Each partner links to its Q-omics profile. Showing the 6 strongest of 10,629 associations by consensus.

CCDC28A-AS1 vs VTA1 — GBM

Explore this scatter interactively →