CCDC28A-AS1

Across TCGA cell cohorts, CCDC28A-AS1 RNA expression is significantly associated with the RNA expression of many other genes, with 7,453 significant associations in total. UPPER_AERODIGESTIVE_TRACT shows the largest number of these associations.

The most reproducible CCDC28A-AS1-associated genes across cancer lineages are SHPRH, FANCD2, and REPS1. Each is linked with CCDC28A-AS1 in more than 11 cancer types. Because this analysis shows association rather than direction, both CCDC28A-AS1-to-partner and partner-to-CCDC28A-AS1 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, CCDC28A-AS1 versus SHPRH in LIVER, with a Pearson correlation of 0.79.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (CCDC28A-AS1→partner) and Y-score (partner→CCDC28A-AS1) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LIVER	SHPRH →	+1.256	+0.770	.001	.006	3	12
UPPER_AERODIGESTIVE_TRACT	FANCD2 →	+1.681	+0.375	<.001	<.001	3	9
OVARY	REPS1 →	+0.854	+0.397	.001	<.001	1	11
BLOOD_Lymphoma	VTA1 →	+0.984	+0.405	<.001	<.001	3	8
LUNG_NSCLC_LUSC	SMIM8 →	+0.891	+0.480	.005	.002	2	9
UPPER_AERODIGESTIVE_TRACT	MCM9 →	+0.937	+0.344	<.001	<.001	3	8

Each partner links to its Q-omics profile. Showing the 6 strongest of 7,453 associations by consensus.

CCDC28A-AS1 vs SHPRH — LIVER

Explore this scatter interactively →