Obsolete nucleic acid phosphodiester bond hydrolysis

pathway activity — cross-omics
GO:0090305Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Obsolete nucleic acid phosphodiester bond hydrolysis pathway is significantly associated with the RNA expression of multiple genes, with the LSCC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are ANK2-AS1, BRCA2, and AK6P1, each associated with the pathway in up to 4 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
LSCCANK2-AS1 →+0.514+0.438<.001.00334
GBMBRCA2 →+0.469+0.230.001.00533
COADAK6P1 →-0.089-0.182.008.00433
LSCCSMAD9 →+0.604+0.395.003.00533
PDACEIF4E3 →+0.278+0.557<.001.00333
LSCCFABP7P1 →+0.737+0.382<.001.00433
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration