Obsolete C-5 methylation of cytosine

pathway activity — cross-omics
GO:0090116Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Obsolete C-5 methylation of cytosine pathway is significantly associated with the protein abundance of multiple proteins, with the COAD cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are DDX27, TOP2A_S1106, and SMARCA4, each associated with the pathway in up to 9 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
COADDDX27 →+0.361+0.061<.001<.00139
LSCCTOP2A_S1106 →+1.488+0.149<.001<.00139
GBMSMARCA4 →+0.500+0.078<.001<.00138
GBMRCOR1_S260 →+0.421+0.066.003.00938
LUADRPL12_S38 →+1.079+0.143<.001<.00138
GBMSMC4 →+0.814+0.087<.001<.00138
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration