Regulation of cell proliferation in bone marrow

Across TCGA patient cohorts, RNA activity of the Regulation of cell proliferation in bone marrow pathway is significantly associated with the RNA expression of multiple genes, with the PDAC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are HMGA2, HMGA2-AS1, and RPSAP52, each associated with the pathway in up to 7 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Regulation of cell proliferation in bone marrow activity versus HMGA2 in PDAC (Pearson r = 0.29).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
PDAC	HMGA2 →	+1.662	+1.172	<.001	<.001	3	7
UCEC	HMGA2-AS1 →	+1.543	+1.124	<.001	<.001	3	7
UCEC	RPSAP52 →	+1.026	+1.116	.002	<.001	2	7
CCRCC	TRPV2 →	+0.313	+0.299	<.001	.008	3	6
CCRCC	MYO1F →	+0.537	+0.479	<.001	.004	3	5
OV	RHOG →	+0.554	+0.953	<.001	<.001	3	5

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0071863 vs HMGA2 — PDAC

Explore this scatter interactively →