Positive regulation of phospholipid biosynthetic process

Across TCGA cell cohorts, RNA activity of the Positive regulation of phospholipid biosynthetic process pathway is significantly associated with the RNA expression of multiple genes, with the BLOOD_Myeloma cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are JMY, GTF2IRD2, and BIRC2, each associated with the pathway in up to 4 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The box plot shows the strongest association, JMY grouped by Positive regulation of phospholipid biosynthetic process-low versus -high activity in BLOOD_Myeloma.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BLOOD_Myeloma	JMY →	+1.270	+1.420	.001	.002	3	3
BLOOD_Myeloma	GTF2IRD2 →	+1.283	+1.480	.008	.005	3	3
UPPER_AERODIGESTIVE_TRACT	BIRC2 →	+1.946	+1.278	.009	<.001	3	3
KIDNEY	GSTM3 →	-2.917	-1.485	.003	<.001	2	4
BLOOD_Leukemia	SGSM3 →	+0.963	+1.208	.003	<.001	3	3
BLOOD_Leukemia	RASIP1 →	+0.801	+0.893	.005	.003	3	3

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

JMY by Positive regulation of phospholipid biosynthetic process activity — BLOOD_Myeloma

Explore this box plot interactively →