Regulation of biomineral tissue development

Across TCGA patient cohorts, RNA activity of the Regulation of biomineral tissue development pathway is significantly associated with the RNA expression of multiple genes, with the COAD cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are KCNMB1, CSF1R, and STAB1, each associated with the pathway in up to 7 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Regulation of biomineral tissue development activity versus KCNMB1 in COAD (Pearson r = 0.37).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
COAD	KCNMB1 →	+1.059	+0.835	<.001	<.001	3	7
BRCA	CSF1R →	+0.601	+0.448	.002	.007	3	6
GBM	STAB1 →	+0.910	+0.268	<.001	.008	3	5
GBM	NUF2 →	-0.802	-0.288	.001	.005	3	5
GBM	NLRP3 →	+0.702	+0.304	<.001	.002	3	5
OV	CCT3 →	-0.302	-0.355	.005	.004	3	5

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0070167 vs KCNMB1 — COAD

Explore this scatter interactively →