Regulation of respiratory system process

Across TCGA patient cohorts, RNA activity of the Regulation of respiratory system process pathway is significantly associated with the RNA expression of multiple genes, with the LSCC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are MCM6, E2F3, and TOPBP1, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Regulation of respiratory system process activity versus MCM6 in LSCC (Pearson r = -0.05).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LSCC	MCM6 →	-0.783	-1.028	<.001	<.001	3	6
LSCC	E2F3 →	-0.721	-0.883	<.001	<.001	3	5
LSCC	TOPBP1 →	-0.891	-0.901	<.001	<.001	3	5
LSCC	CKAP2L →	-0.771	-0.830	<.001	<.001	3	5
LSCC	CCNE2 →	-0.710	-0.708	<.001	<.001	3	5
BRCA	STK38 →	-0.669	-0.676	<.001	.001	3	5

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0044065 vs MCM6 — LSCC

Explore this scatter interactively →