Outer ear morphogenesis

pathway activity — cross-omics
GO:0042473Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Outer ear morphogenesis pathway is significantly associated with the RNA expression of multiple genes, with the PDAC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are LMOD1, MGP, and RFTN1, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
PDACLMOD1 →+0.655+0.284<.001<.00136
CCRCCMGP →+1.164+0.137<.001.00435
LSCCRFTN1 →+0.660+0.284<.001<.00135
LSCCSYNPO2 →+0.818+0.182<.001<.00135
LSCCPLAC9 →+0.599+0.204.001.00335
PDACPLN →+0.659+0.247.001<.00135
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration