Plasma lipoprotein particle clearance

Across TCGA patient cohorts, RNA activity of the Plasma lipoprotein particle clearance pathway is significantly associated with the RNA expression of multiple genes, with the OV cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are AOC3, COPZ2, and EFEMP1, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Plasma lipoprotein particle clearance activity versus AOC3 in OV (Pearson r = 0.45).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
OV	AOC3 →	+1.466	+0.161	<.001	.004	3	6
OV	COPZ2 →	+1.581	+0.155	<.001	.004	3	6
OV	EFEMP1 →	+1.449	+0.195	<.001	<.001	3	6
GBM	FCGR2A →	+1.123	+0.240	<.001	<.001	3	6
LSCC	NCF2 →	+0.765	+0.169	<.001	<.001	3	6
GBM	NLRP12 →	+0.453	+0.245	<.001	<.001	3	6

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0034381 vs AOC3 — OV

Explore this scatter interactively →