Interleukin-2 production

pathway activity — cross-omics
GO:0032623Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Interleukin-2 production pathway is significantly associated with the RNA expression of multiple genes, with the LSCC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are PARVG, CD48, and CCR2, each associated with the pathway in up to 8 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
LSCCPARVG →+0.653+0.517<.001<.00137
LSCCCD48 →+0.662+0.492<.001<.00137
HNSCCCR2 →+0.788+0.366.006.00336
GBMGAPT →+0.843+0.570<.001<.00136
GBMPLCB2 →+0.675+0.421<.001<.00136
LSCCFLI1 →+0.600+0.472<.001<.00136
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration