Obsolete histone ubiquitination

pathway activity — cross-omics
GO:0016574Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Obsolete histone ubiquitination pathway is significantly associated with the protein abundance of multiple proteins, with the COAD cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are UHRF1, RFC4, and SMC2, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
COADUHRF1 →+0.601+0.041<.001<.00136
LSCCRFC4 →+0.431+0.060<.001<.00136
BRCASMC2 →+0.509+0.043<.001<.00136
LSCCSTMN1 →+0.471+0.051<.001<.00136
BRCACDK1 →+0.750+0.047<.001<.00136
BRCADNMT1 →+0.373+0.041<.001<.00136
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration