Regulation of phosphatase activity

Across TCGA patient cohorts, RNA activity of the Regulation of phosphatase activity pathway is significantly associated with the RNA expression of multiple genes, with the LSCC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are GRHL2, TONSL, and KIF22, each associated with the pathway in up to 7 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Regulation of phosphatase activity activity versus GRHL2 in LSCC (Pearson r = -0.06).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LSCC	GRHL2 →	-0.769	-0.168	<.001	.001	3	7
LUAD	TONSL →	-0.769	-0.187	<.001	<.001	3	6
LUAD	KIF22 →	-0.425	-0.102	.002	.008	3	6
LSCC	DSCC1 →	-0.831	-0.162	<.001	.002	3	6
LSCC	TICRR →	-0.823	-0.191	.001	<.001	3	6
LSCC	TOPBP1 →	-0.532	-0.121	.007	.004	3	6

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0010921 vs GRHL2 — LSCC

Explore this scatter interactively →