Regulation of asymmetric cell division

pathway activity — cross-omics
GO:0009786Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Regulation of asymmetric cell division pathway is significantly associated with the protein abundance of multiple proteins, with the HNSC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are RFC2, RFC5, and SMC4, each associated with the pathway in up to 9 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
HNSCRFC2 →+0.408+0.142<.001<.00139
HNSCRFC5 →+0.427+0.134<.001<.00139
GBMSMC4 →+0.658+0.381<.001<.00139
BRCATOP2A_S1106 →+1.050+0.126<.001<.00139
LUADTOP2A_S1247 →+1.128+0.353<.001.00439
LSCCXRCC6_T455 →+0.795+0.152<.001<.00139
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration