VTRNA2-1

mutation — cross-omics
Cross-omicsMUTATION → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, VTRNA2-1 mutation is significantly associated with the RNA expression of many other genes, with 1 significant associations in total. SKCM shows the largest number of these associations.

The most reproducible VTRNA2-1-associated genes across cancer lineages are RNA5SP416. Each is linked with VTRNA2-1 in more than 1 cancer types. Because this analysis shows association rather than direction, both VTRNA2-1-to-partner and partner-to-VTRNA2-1 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, RNA5SP416 grouped by VTRNA2-1-low versus VTRNA2-1-high in SKCM.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (VTRNA2-1→partner) and Y-score (partner→VTRNA2-1) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
SKCMRNA5SP416 →+0.308+7.816<.001.00831
Each partner links to its Q-omics profile. Showing the 1 strongest of 1 associations by consensus.

RNA5SP416 by VTRNA2-1 expression — SKCM

Box plot of RNA5SP416 in VTRNA2-1-low vs VTRNA2-1-high samples in SKCM.

Explore this box plot interactively →

Exploration