VAMP3

Across TCGA patient cohorts, VAMP3 RNA expression is significantly associated with the protein abundance of many other proteins, with 15,258 significant associations in total. GBM shows the largest number of these associations.

The most reproducible VAMP3-associated proteins across cancer lineages are LUZP1, RPS6KA1, and LDLRAP1. Each is linked with VAMP3 in more than 6 cancer types. Because this analysis shows association rather than direction, both VAMP3-to-partner and partner-to-VAMP3 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, VAMP3 versus LUZP1 in BRCA, with a Pearson correlation of 0.43.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (VAMP3→partner) and Y-score (partner→VAMP3) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BRCA	LUZP1 →	+0.414	+0.596	<.001	<.001	3	7
LUAD	RPS6KA1 →	+0.381	+0.443	<.001	<.001	3	6
GBM	LDLRAP1 →	+0.429	+0.381	<.001	<.001	3	6
OV	DAPK3 →	+0.437	+0.516	<.001	<.001	3	6
COAD	PNPT1 →	-0.362	-0.448	.001	<.001	3	6
BRCA	MRPS16 →	-0.424	-0.488	<.001	<.001	3	5

Each partner links to its Q-omics profile. Showing the 6 strongest of 15,258 associations by consensus.

VAMP3 vs LUZP1 — BRCA

Explore this scatter interactively →