TSNARE1

Across TCGA patient cohorts, TSNARE1 mutation is significantly associated with the RNA expression of many other genes, with 2,169 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible TSNARE1-associated genes across cancer lineages are RN7SL354P, MIR5693, and ARL5AP4. Each is linked with TSNARE1 in more than 2 cancer types. Because this analysis shows association rather than direction, both TSNARE1-to-partner and partner-to-TSNARE1 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, RN7SL354P grouped by TSNARE1-low versus TSNARE1-high in BLCA.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (TSNARE1→partner) and Y-score (partner→TSNARE1) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BLCA	RN7SL354P →	+0.217	+4.883	<.001	.002	3	3
LIHC	MIR5693 →	+0.536	+5.033	<.001	.009	3	2
LIHC	ARL5AP4 →	+0.098	+5.108	<.001	.008	3	2
SKCM	RAD17 →	+0.727	+3.198	.005	.009	3	2
SKCM	TRAPPC10 →	+0.668	+3.227	.002	.009	3	2
SKCM	PSMD6 →	+0.522	+3.198	.006	.009	3	2

Each partner links to its Q-omics profile. Showing the 6 strongest of 2,169 associations by consensus.

RN7SL354P by TSNARE1 expression — BLCA

Explore this box plot interactively →