SYNJ2-IT1

Across TCGA patient cohorts, SYNJ2-IT1 RNA expression is significantly associated with the go_rna of many other GO terms, with 6,716 significant associations in total. STAD shows the largest number of these associations.

The most reproducible SYNJ2-IT1-associated GO terms across cancer lineages are Ribose phosphate biosynthetic process, Positive regulation of DNA metabolic process, and Signal transduction in response to DNA damage. Each is linked with SYNJ2-IT1 in more than 17 cancer types. Because this analysis shows association rather than direction, both SYNJ2-IT1-to-partner and partner-to-SYNJ2-IT1 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Ribose phosphate biosynthetic process grouped by SYNJ2-IT1-low versus SYNJ2-IT1-high in STAD.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (SYNJ2-IT1→partner) and Y-score (partner→SYNJ2-IT1) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
STAD	Ribose phosphate biosynthetic process →	+0.056	+0.268	<.001	<.001	3	18
STAD	Positive regulation of DNA metabolic process →	+0.056	+0.273	<.001	<.001	3	18
STAD	Signal transduction in response to DNA damage →	+0.056	+0.254	<.001	<.001	3	17
STAD	Nucleoside phosphate biosynthetic process →	+0.052	+0.276	<.001	<.001	3	17
STAD	Positive regulation of post-translational protein modification →	+0.057	+0.288	<.001	<.001	3	17
STAD	Regulation of protein ubiquitination →	+0.057	+0.290	<.001	<.001	3	16

Each partner links to its Q-omics profile. Showing the 6 strongest of 6,716 associations by consensus.

Ribose phosphate biosynthetic process by SYNJ2-IT1 expression — STAD

Explore this box plot interactively →