SNRPF

RNA expression — cross-omics
Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, SNRPF RNA expression is significantly associated with the protein abundance of many other proteins, with 21,103 significant associations in total. LSCC shows the largest number of these associations.

The most reproducible SNRPF-associated proteins across cancer lineages are MCM4, MCM6, and MCM7. Each is linked with SNRPF in more than 8 cancer types. Because this analysis shows association rather than direction, both SNRPF-to-partner and partner-to-SNRPF results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, SNRPF versus MCM4 in BRCA, with a Pearson correlation of 0.38.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (SNRPF→partner) and Y-score (partner→SNRPF) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
BRCAMCM4 →+0.643+0.518<.001<.00139
BRCAMCM6 →+0.728+0.589<.001<.00139
BRCAMCM7 →+0.646+0.549<.001<.00139
LSCCVRK1 →+0.791+0.941<.001<.00139
GBMCTR9 →+0.258+0.477<.001<.00139
LSCCRFC4 →+0.517+0.781<.001<.00138
Each partner links to its Q-omics profile. Showing the 6 strongest of 21,103 associations by consensus.

SNRPF vs MCM4 — BRCA

Per-sample scatter of SNRPF vs MCM4 in BRCA (Pearson r = 0.38).

Explore this scatter interactively →

Exploration