SMG6-IT1

Across TCGA patient cohorts, SMG6-IT1 RNA expression is significantly associated with the protein abundance of many other proteins, with 5,499 significant associations in total. LSCC shows the largest number of these associations.

The most reproducible SMG6-IT1-associated proteins across cancer lineages are PSMA3, ARAF_S186, and SNRNP200. Each is linked with SMG6-IT1 in more than 2 cancer types. Because this analysis shows association rather than direction, both SMG6-IT1-to-partner and partner-to-SMG6-IT1 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, SMG6-IT1 versus PSMA3 in PDAC, with a Pearson correlation of 0.26.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (SMG6-IT1→partner) and Y-score (partner→SMG6-IT1) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
PDAC	PSMA3 →	+0.203	+0.315	.002	<.001	3	3
HNSC	ARAF_S186 →	-0.613	-0.604	.002	.004	3	3
LSCC	SNRNP200 →	+0.167	+0.416	.005	.001	3	3
LSCC	PHF10_S56 →	+0.672	+0.489	<.001	<.001	3	3
PDAC	NFYA_S326 →	+0.616	+0.246	<.001	.004	3	3
CCRCC	RCN3 →	+0.390	+0.381	<.001	.001	3	2

Each partner links to its Q-omics profile. Showing the 6 strongest of 5,499 associations by consensus.

SMG6-IT1 vs PSMA3 — PDAC

Explore this scatter interactively →