SMARCAL1-AS1

RNA expression — cross-omics
Cross-omicsRNA → FUNCTION-RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, SMARCAL1-AS1 RNA expression is significantly associated with the go_rna of many other GO terms, with 6,528 significant associations in total. STAD shows the largest number of these associations.

The most reproducible SMARCAL1-AS1-associated GO terms across cancer lineages are Regulation of lysosomal lumen pH, Negative regulation of lymphocyte activation, and Regulation of ERAD pathway. Each is linked with SMARCAL1-AS1 in more than 10 cancer types. Because this analysis shows association rather than direction, both SMARCAL1-AS1-to-partner and partner-to-SMARCAL1-AS1 results are reported.

Each partner links to its own Q-omics profile.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (SMARCAL1-AS1→partner) and Y-score (partner→SMARCAL1-AS1) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner GO termX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
STADRegulation of lysosomal lumen pH →+0.050+0.074<.001<.001311
STADNegative regulation of lymphocyte activation →+0.052+0.138<.001<.001310
ESCARegulation of ERAD pathway →+0.066+0.093<.001<.001310
STADGolgi lumen acidification →+0.056+0.123<.001<.001310
STADCytoplasmic pattern recognition receptor signaling pathway →+0.045+0.066<.001<.00139
STADRegulation of adaptive immune response →+0.044+0.068<.001<.00139
Each partner links to its Q-omics profile. Showing the 6 strongest of 6,528 associations by consensus.

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