SETDB1

associated omics data
SET domain bifurcated histone lysine methyltransferase 1Genealiases: ESET · H3-K9-HMTase4 · KG1T · KMT1E · TDRD21

Q-omics provides the consensus-scored SETDB1 profile across patient tissues and cancer cell-line models. SETDB1 expression is associated with patient survival in 26 of 34 cancer types, with the highest sampling consensus in ACC. Among the 18 cancer types available for tumor–normal comparison, SETDB1 is differentially expressed in 15, with the highest sampling consensus in HNSC. Additionally, SETDB1 protein abundance shows 24,584 significant protein co-abundance associations, with the highest sampling consensus in GBM. Together, these results highlight ACC, HNSC, and GBM as cancer lineages where SETDB1 shows reproducible signals across survival, tumor–normal expression, and patient cross-omics analyses.

Every result is evaluated using two consensus scores. Sampling consensus measures how consistently a finding is reproduced within a cancer lineage across different conditions. Lineage consensus measures how broadly the result is shared across cancer types, distinguishing pan-cancer signals from lineage-specific patterns.

Survival associations

This table summarizes SETDB1 survival associations across molecular data types. SETDB1 RNA expression shows survival associations in the most cancer types (26), followed by mutation status (7) and mass-spec protein abundance (5). The rightmost column indicates the cancer type with the highest sampling consensus for each molecular layer.
SETDB1 data typeSurvival analysisLineage consensusLineage of highest sampling consensus
RNAKaplan–Meier26ACC (95)view →
MutationKaplan–Meier7UCEC (12)view →
Protein (mass-spec)Kaplan–Meier5LUAD (40)view →
This table ranks reproducible SETDB1 RNA expression–survival associations across cancer types. High SETDB1 expression shows unfavorable associations in ACC, LIHC, KIRP and CESC, but favorable associations in KIRC and HNSC. The ACC Kaplan–Meier curve shows clear separation, with the high-expression group declining faster, consistent with the unfavorable association (log-rank p < 0.001). Together, the overview and detailed table identify ACC as the clearest survival context for SETDB1 RNA expression.
LineageMeasureSplitStageAUC1
high
AUC2
low
pSampling consensus
ACCDFSMedianAll0.1870.678<.00195view →
LIHCOSTertileAll0.6940.852<.00142view →
KIRCDFSTertileAll0.7760.546.00636view →
KIRPDFSTertileAll0.6420.788.00827view →
HNSCDFSQuartileIV0.4310.247.00626view →
CESCDFSQuartileAll0.7280.879.00224view →
Pink = unfavorable, green = favorable. all 26 lineages →

SETDB1-ACC (DFS)

Kaplan–Meier survival curve for SETDB1 RNA expression in ACC: high vs low expression groups.

Explore this curve interactively →

Tumor vs Normal expression

This table summarizes SETDB1 tumor–normal expression differences by data type. RNA shows broader differences across cancer types, with a lineage consensus of 15, while mass-spec protein shows differences in 4. The strongest signals are observed in KIRC for RNA and CCRCC for protein.
SETDB1 data typeExpression analysisLineage consensusLineage of highest sampling consensus
RNABox plot15KIRC (11)view →
Protein (mass-spec)Box plot4CCRCC (12)view →
This table ranks reproducible tumor–normal expression differences for SETDB1. A negative fold-change indicates higher expression in normal tissue than in tumor tissue. SETDB1 shows higher tumor expression in HNSC, KIRC, BLCA, COAD, LIHC and STAD. The HNSC box plot shows higher SETDB1 RNA expression in tumor versus normal tissue (log2 FC = +0.755, t-test p < 0.001).
LineageGenderStageFold-changepSampling consensus
HNSCAllIII,IV+0.755<.00111view →
KIRCFemaleAll+0.692<.00111view →
BLCAAllIII,IV+0.794<.00110view →
COADMaleII,III,IV+0.594<.00110view →
LIHCFemaleII,III,IV+1.279<.0019view →
STADMaleII,III,IV+1.000<.0018view →
Green = repressed in tumor. all 15 lineages →

SETDB1-HNSC

Tumor-vs-normal expression box plot for SETDB1 in HNSC.

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Cross-omics associations

This table shows molecular features associated with SETDB1 in patient tissues and cancer cell lines. In patient samples, SETDB1 shows the broadest associations at the RNA and protein expression levels, with GBM recurring as the lineage with the largest associated feature set. In cancer cell lines, SETDB1 RNA and mutation anchors are most strongly linked to RNA-expression features, especially in BLOOD_Leukemia, while CRISPR and shRNA rows add functional-dependency signals in UPPER_AERODIGESTIVE_TRACT and SOFT_TISSUE.
Associated data typeStrength (# associated data)Lineage of highest associated data
Protein (mass-spec)
Protein (mass-spec)24,584GBM (11777)view →
RNA15,388GBM (6811)view →
RNA
RNA21,183ACC (10265)view →
Protein (mass-spec)18,042GBM (7205)view →
Mutation
RNA4,069UCEC (3513)view →
Protein (RPPA)34UCEC (31)view →
Associated data typeStrength (# associated data)Lineage of highest associated data
CRISPR
RNA2,389BLOOD_Leukemia (528)view →
CRISPR1,731BLOOD_Leukemia (129)view →
RNA
RNA12,543UPPER_AERODIGESTIVE_TRACT (5643)view →
Function (RNA)5,272SOFT_TISSUE (1975)view →
Mutation
Mutation3,905BLOOD_Leukemia (2626)view →
RNA47BLOOD_Leukemia (24)view →
shRNA
RNA2,391SOFT_TISSUE (893)view →
shRNA2,294SOFT_TISSUE (427)view →