SAGE3P

Across TCGA patient cohorts, SAGE3P RNA expression is significantly associated with the go_rna of many other GO terms, with 4,648 significant associations in total. STAD shows the largest number of these associations.

The most reproducible SAGE3P-associated GO terms across cancer lineages are Quinone metabolic process, Cellular respiration, and Regulation of endosome size. Each is linked with SAGE3P in more than 5 cancer types. Because this analysis shows association rather than direction, both SAGE3P-to-partner and partner-to-SAGE3P results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Quinone metabolic process grouped by SAGE3P-low versus SAGE3P-high in STAD.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (SAGE3P→partner) and Y-score (partner→SAGE3P) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
STAD	Quinone metabolic process →	+0.085	+0.054	<.001	.001	3	6
STAD	Cellular respiration →	+0.130	+0.043	<.001	.001	3	6
STAD	Regulation of endosome size →	+0.090	+0.059	<.001	.003	3	6
STAD	Aerobic respiration →	+0.136	+0.045	<.001	<.001	3	6
STAD	Nucleoside triphosphate biosynthetic process →	+0.129	+0.057	<.001	.002	3	6
STAD	NADH dehydrogenase complex assembly →	+0.131	+0.042	<.001	.002	3	5

Each partner links to its Q-omics profile. Showing the 6 strongest of 4,648 associations by consensus.

Quinone metabolic process by SAGE3P expression — STAD

Explore this box plot interactively →