RP9

Across TCGA patient cohorts, RP9 protein abundance is significantly associated with the RNA expression of many other genes, with 10,165 significant associations in total. LSCC shows the largest number of these associations.

The most reproducible RP9-associated genes across cancer lineages are LSM5, POLD2, and SKA3. Each is linked with RP9 in more than 5 cancer types. Because this analysis shows association rather than direction, both RP9-to-partner and partner-to-RP9 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, RP9 versus LSM5 in HNSC, with a Pearson correlation of 0.38.

protein abundance associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (RP9→partner) and Y-score (partner→RP9) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
HNSC	LSM5 →	+0.855	+0.449	<.001	<.001	3	6
COAD	POLD2 →	+0.878	+0.711	.002	.003	3	6
HNSC	SKA3 →	+0.836	+0.311	<.001	.005	3	6
HNSC	DNAJC2 →	+0.569	+0.280	<.001	<.001	3	5
HNSC	TAX1BP1 →	+0.688	+0.439	.007	<.001	3	5
BRCA	TBRG4 →	+0.614	+0.542	<.001	<.001	3	5

Each partner links to its Q-omics profile. Showing the 6 strongest of 10,165 associations by consensus.

RP9 vs LSM5 — HNSC

Explore this scatter interactively →