RNU4ATAC

Across TCGA patient cohorts, RNU4ATAC RNA expression is significantly associated with the protein abundance of many other proteins, with 7,520 significant associations in total. CCRCC shows the largest number of these associations.

The most reproducible RNU4ATAC-associated proteins across cancer lineages are PRKCD_S645, APEH_S187, and NFIB. Each is linked with RNU4ATAC in more than 2 cancer types. Because this analysis shows association rather than direction, both RNU4ATAC-to-partner and partner-to-RNU4ATAC results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, RNU4ATAC versus PRKCD_S645 in BRCA, with a Pearson correlation of -0.24.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (RNU4ATAC→partner) and Y-score (partner→RNU4ATAC) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BRCA	PRKCD_S645 →	-0.471	-0.708	.005	.002	3	3
LSCC	APEH_S187 →	-0.321	-0.586	<.001	<.001	3	3
GBM	NFIB →	+0.434	+0.621	.006	.001	3	3
LSCC	USO1 →	-0.262	-0.656	<.001	<.001	3	2
LSCC	USP39 →	+0.250	+0.486	.003	.002	3	2
LSCC	USP42_S1222 →	+0.343	+0.448	<.001	.005	3	2

Each partner links to its Q-omics profile. Showing the 6 strongest of 7,520 associations by consensus.

RNU4ATAC vs PRKCD_S645 — BRCA

Explore this scatter interactively →