RNF39

mutation — cross-omics
Cross-omicsMUTATION → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNF39 mutation is significantly associated with the RNA expression of many other genes, with 280 significant associations in total. COAD shows the largest number of these associations.

The most reproducible RNF39-associated genes across cancer lineages are RNU6-13P, RNA5SP79, and RNU6-1228P. Each is linked with RNF39 in more than 2 cancer types. Because this analysis shows association rather than direction, both RNF39-to-partner and partner-to-RNF39 results are reported.

Each partner links to its own Q-omics profile.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (RNF39→partner) and Y-score (partner→RNF39) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
UCECRNU6-13P →+0.426+3.063<.001.00433
BLCARNA5SP79 →+0.517+4.497<.001.00932
HNSCRNU6-1228P →+0.342+6.468<.001.00132
HNSCLINC02661 →+0.132+6.468<.001.00132
UCECRNU6-90P →+0.627+3.734.001<.00132
HNSCPPP1R2P5 →+0.066+5.435.001.00532
Each partner links to its Q-omics profile. Showing the 6 strongest of 280 associations by consensus.

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