OGFOD3

protein abundance — cross-omics
Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, OGFOD3 protein abundance is significantly associated with the RNA expression of many other genes, with 6,223 significant associations in total. GBM shows the largest number of these associations.

The most reproducible OGFOD3-associated genes across cancer lineages are LRRC59, PTPRT, and NBEAL1. Each is linked with OGFOD3 in more than 3 cancer types. Because this analysis shows association rather than direction, both OGFOD3-to-partner and partner-to-OGFOD3 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, OGFOD3 versus LRRC59 in OV, with a Pearson correlation of 0.28.

protein abundance associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (OGFOD3→partner) and Y-score (partner→OGFOD3) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
OVLRRC59 →+0.560+0.275.005.00333
GBMPTPRT →-1.175-0.246.003.00533
CCRCCNBEAL1 →-0.490-0.393<.001<.00133
LUADALAD →-0.492-0.323<.001.00333
PDACFAM122A →-0.401-0.687.001.00424
LSCCERBB3 →-0.674-0.270.001<.00133
Each partner links to its Q-omics profile. Showing the 6 strongest of 6,223 associations by consensus.

OGFOD3 vs LRRC59 — OV

Per-sample scatter of OGFOD3 vs LRRC59 in OV (Pearson r = 0.28).

Explore this scatter interactively →

Exploration