LSP1P3

Across TCGA patient cohorts, LSP1P3 mutation is significantly associated with the RNA expression of many other genes, with 12 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible LSP1P3-associated genes across cancer lineages are LINC01896, LINC02563, and MIR5707. Each is linked with LSP1P3 in more than 1 cancer types. Because this analysis shows association rather than direction, both LSP1P3-to-partner and partner-to-LSP1P3 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, LINC01896 grouped by LSP1P3-low versus LSP1P3-high in UCEC.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LSP1P3→partner) and Y-score (partner→LSP1P3) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
UCEC	LINC01896 →	+1.514	+4.078	<.001	.005	3	1
UCEC	LINC02563 →	+0.438	+5.005	<.001	<.001	3	1
UCEC	MIR5707 →	+0.552	+4.442	<.001	.007	3	1
LUSC	TTTY1B →	+0.054	+7.924	<.001	.008	3	1
LUSC	RNA5SP397 →	+0.893	+7.924	<.001	.008	3	1
UCEC	RNU6-391P →	+0.423	+4.442	<.001	.007	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 12 associations by consensus.

LINC01896 by LSP1P3 expression — UCEC

Explore this box plot interactively →