LNCNEF

Across TCGA patient cohorts, LNCNEF RNA expression is significantly associated with the go_rna of many other GO terms, with 6,827 significant associations in total. STAD shows the largest number of these associations.

The most reproducible LNCNEF-associated GO terms across cancer lineages are Response to UV, Obsolete ubiquitin-dependent ERAD pathway, and Cellular response to unfolded protein. Each is linked with LNCNEF in more than 11 cancer types. Because this analysis shows association rather than direction, both LNCNEF-to-partner and partner-to-LNCNEF results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Response to UV grouped by LNCNEF-low versus LNCNEF-high in STAD.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LNCNEF→partner) and Y-score (partner→LNCNEF) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
STAD	Response to UV →	+0.056	+0.082	<.001	<.001	3	11
ESCA	Obsolete ubiquitin-dependent ERAD pathway →	+0.068	+0.103	<.001	<.001	3	11
ESCA	Cellular response to unfolded protein →	+0.082	+0.166	<.001	<.001	3	11
TGCT	Glycolipid biosynthetic process →	+0.044	+0.086	<.001	.001	3	10
ESCA	Execution phase of apoptosis →	+0.042	+0.109	<.001	<.001	3	10
ESCA	Proton motive force-driven ATP synthesis →	+0.059	+0.084	<.001	.001	3	10

Each partner links to its Q-omics profile. Showing the 6 strongest of 6,827 associations by consensus.

Response to UV by LNCNEF expression — STAD

Explore this box plot interactively →