LNCNEF

Across TCGA pan-cancer cohorts, LNCNEF RNA differs between tumor and matched normal tissue in 2 of 18 cancer types tested, making tumor–normal expression one of LNCNEF’s most consistent transcriptional readouts.

The strongest signal is observed in thyroid carcinoma (THCA), where LNCNEF RNA is repressed in tumor relative to normal tissue. In most cancer types LNCNEF is over-expressed in tumor, although a few such as THCA show the opposite, repressed pattern.

THCA and LIHC are the cancer types where LNCNEF tumor–normal differential expression is most reproducible.

RNA tumor vs normal associations by lineage

Ranked by sampling consensus. Fold-change is the tumor-versus-normal difference in LNCNEF RNA (log₂); positive values indicate higher expression in tumor. p-values are from the differential-expression test.

Lineage	Gender	Stage	Fold-change	p	Sampling consensus
THCA	All	IV	−3.187	<.001	11	view →
LIHC	All	All	+0.022	.009	2	view →

Pink = over-expressed in tumor, green = repressed in tumor. Showing the 2 strongest of 2 lineages.

LNCNEF–THCA

Open the THCA breakdown →