LINC01990

Across TCGA patient cohorts, LINC01990 RNA expression is significantly associated with the protein abundance of many other proteins, with 8,376 significant associations in total. BRCA shows the largest number of these associations.

The most reproducible LINC01990-associated proteins across cancer lineages are TNS1, KANK2, and SORBS3. Each is linked with LINC01990 in more than 4 cancer types. Because this analysis shows association rather than direction, both LINC01990-to-partner and partner-to-LINC01990 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC01990 versus TNS1 in BRCA, with a Pearson correlation of 0.30.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01990→partner) and Y-score (partner→LINC01990) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BRCA	TNS1 →	+0.453	+0.176	.001	<.001	3	5
BRCA	KANK2 →	+0.490	+0.129	<.001	<.001	3	5
BRCA	SORBS3 →	+0.345	+0.186	<.001	<.001	3	4
BRCA	SYNPO2_S729 →	+0.680	+0.159	<.001	<.001	3	4
BRCA	PRKG1 →	+0.367	+0.135	.002	.003	3	4
BRCA	AIDA →	+0.220	+0.146	.002	<.001	3	4

Each partner links to its Q-omics profile. Showing the 6 strongest of 8,376 associations by consensus.

LINC01990 vs TNS1 — BRCA

Explore this scatter interactively →