LINC01888

Across TCGA patient cohorts, LINC01888 RNA expression is significantly associated with the protein abundance of many other proteins, with 5,517 significant associations in total. LSCC shows the largest number of these associations.

The most reproducible LINC01888-associated proteins across cancer lineages are GPSM3, ARHGAP25_S363, and ARHGAP25_S534. Each is linked with LINC01888 in more than 3 cancer types. Because this analysis shows association rather than direction, both LINC01888-to-partner and partner-to-LINC01888 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC01888 versus GPSM3 in OV, with a Pearson correlation of 0.34.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01888→partner) and Y-score (partner→LINC01888) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
OV	GPSM3 →	+0.377	+0.175	.003	<.001	3	4
GBM	ARHGAP25_S363 →	+0.648	+0.245	<.001	<.001	3	4
LSCC	ARHGAP25_S534 →	+0.549	+0.173	.001	.002	3	4
OV	CYP7B1 →	+0.522	+0.129	.001	.001	3	3
GBM	ARHGAP25_S512 →	+0.550	+0.305	<.001	<.001	3	3
LSCC	RCSD1_S68 →	+0.408	+0.193	<.001	<.001	3	3

Each partner links to its Q-omics profile. Showing the 6 strongest of 5,517 associations by consensus.

LINC01888 vs GPSM3 — OV

Explore this scatter interactively →