LINC01607

Across TCGA patient cohorts, LINC01607 RNA expression is significantly associated with the protein abundance of many other proteins, with 10,618 significant associations in total. HNSC shows the largest number of these associations.

The most reproducible LINC01607-associated proteins across cancer lineages are SMARCA4, ISG20, and KAT7. Each is linked with LINC01607 in more than 3 cancer types. Because this analysis shows association rather than direction, both LINC01607-to-partner and partner-to-LINC01607 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC01607 versus SMARCA4 in OV, with a Pearson correlation of 0.30.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01607→partner) and Y-score (partner→LINC01607) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
OV	SMARCA4 →	+0.296	+0.357	.008	.004	3	4
HNSC	ISG20 →	-0.551	-0.329	<.001	.001	3	4
BRCA	KAT7 →	+0.360	+0.424	<.001	<.001	3	4
COAD	TRIM22 →	-0.399	-0.135	<.001	.003	3	4
BRCA	PTPRC →	-0.470	-0.329	.001	<.001	3	4
BRCA	WIPF1 →	-0.352	-0.280	<.001	.001	3	4

Each partner links to its Q-omics profile. Showing the 6 strongest of 10,618 associations by consensus.

LINC01607 vs SMARCA4 — OV

Explore this scatter interactively →