LINC01549

Across TCGA patient cohorts, LINC01549 RNA expression is significantly associated with the RNA expression of many other genes, with 9,047 significant associations in total. TGCT shows the largest number of these associations.

The most reproducible LINC01549-associated genes across cancer lineages are CXADR, RPL39P40, and LOH12CR2. Each is linked with LINC01549 in more than 17 cancer types. Because this analysis shows association rather than direction, both LINC01549-to-partner and partner-to-LINC01549 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC01549 versus CXADR in SKCM, with a Pearson correlation of 0.48.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01549→partner) and Y-score (partner→LINC01549) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
SKCM	CXADR →	+1.283	+0.428	<.001	<.001	3	18
LIHC	RPL39P40 →	+1.301	+1.408	<.001	<.001	3	17
GBM	LOH12CR2 →	+0.581	+0.818	<.001	.002	2	14
COAD	FGGY →	+0.859	+0.409	<.001	<.001	3	13
READ	CYP39A1 →	+0.900	+0.493	<.001	.003	3	12
GBM	SOX2-OT →	+0.607	+0.746	<.001	<.001	3	11

Each partner links to its Q-omics profile. Showing the 6 strongest of 9,047 associations by consensus.

LINC01549 vs CXADR — SKCM

Explore this scatter interactively →