LINC01541

Across TCGA patient cohorts, LINC01541 RNA expression is significantly associated with the mutation status of many other genes, with 5,752 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible LINC01541-associated genes across cancer lineages are STAG2, PYGM, and SYNE2. Each is linked with LINC01541 in more than 1 cancer types. Because this analysis shows association rather than direction, both LINC01541-to-partner and partner-to-LINC01541 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, STAG2 grouped by LINC01541-low versus LINC01541-high in LUSC.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01541→partner) and Y-score (partner→LINC01541) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LUSC	STAG2 →	+3.391	+0.171	.003	.007	3	2
BLCA	PYGM →	+2.246	+1.040	.003	<.001	3	2
UCEC	SYNE2 →	-1.144	-0.906	.001	.001	3	2
ESCA	NYAP2 →	+4.321	+0.158	.001	<.001	3	1
ESCA	ZNF730 →	+2.736	+0.112	.008	<.001	3	1
ESCA	GRIN3A →	+4.000	+0.149	.005	<.001	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 5,752 associations by consensus.

STAG2 by LINC01541 expression — LUSC

Explore this box plot interactively →