LINC01498

Across TCGA patient cohorts, LINC01498 RNA expression is significantly associated with the protein abundance of many other proteins, with 4,687 significant associations in total. LSCC shows the largest number of these associations.

The most reproducible LINC01498-associated proteins across cancer lineages are SMARCA4, SMC2, and SMC4. Each is linked with LINC01498 in more than 2 cancer types. Because this analysis shows association rather than direction, both LINC01498-to-partner and partner-to-LINC01498 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC01498 versus SMARCA4 in CCRCC, with a Pearson correlation of 0.46.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01498→partner) and Y-score (partner→LINC01498) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
CCRCC	SMARCA4 →	+0.129	+0.054	.001	.005	3	2
LSCC	SMC2 →	+0.420	+0.059	<.001	<.001	3	2
LSCC	SMC4 →	+0.388	+0.061	<.001	<.001	3	2
PDAC	CD72 →	-1.134	-0.058	.002	.002	3	2
GBM	CIT →	+0.405	+0.124	.001	.009	3	2
CCRCC	ERICH5 →	-0.493	-0.037	<.001	.001	3	2

Each partner links to its Q-omics profile. Showing the 6 strongest of 4,687 associations by consensus.

LINC01498 vs SMARCA4 — CCRCC

Explore this scatter interactively →