LINC01397

Across TCGA patient cohorts, LINC01397 RNA expression is significantly associated with the RNA expression of many other genes, with 8,728 significant associations in total. TGCT shows the largest number of these associations.

The most reproducible LINC01397-associated genes across cancer lineages are UBL4B, CCDC14, and NPHP3. Each is linked with LINC01397 in more than 31 cancer types. Because this analysis shows association rather than direction, both LINC01397-to-partner and partner-to-LINC01397 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC01397 versus UBL4B in SARC, with a Pearson correlation of 0.92.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01397→partner) and Y-score (partner→LINC01397) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
SARC	UBL4B →	+0.901	+0.783	<.001	<.001	3	32
KIRP	CCDC14 →	+0.689	+0.143	<.001	<.001	3	23
UCS	NPHP3 →	+0.614	+0.750	.001	<.001	3	23
ESCA	PAXBP1 →	+0.596	+0.318	<.001	<.001	3	23
KIRP	SH3BP5-AS1 →	+0.613	+0.122	<.001	<.001	3	22
LUSC	RPL32P3 →	+0.618	+0.296	<.001	<.001	3	22

Each partner links to its Q-omics profile. Showing the 6 strongest of 8,728 associations by consensus.

LINC01397 vs UBL4B — SARC

Explore this scatter interactively →