LINC00544

Across TCGA patient cohorts, LINC00544 protein abundance is significantly associated with the RNA expression of many other genes, with 330 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible LINC00544-associated genes across cancer lineages are CARD10, FBXO7, and PACSIN2. Each is linked with LINC00544 in more than 1 cancer types. Because this analysis shows association rather than direction, both LINC00544-to-partner and partner-to-LINC00544 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC00544 versus CARD10 in UCEC, with a Pearson correlation of 0.78.

protein abundance associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00544→partner) and Y-score (partner→LINC00544) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
UCEC	CARD10 →	+2.675	+2.042	.001	.003	3	1
UCEC	FBXO7 →	+0.953	+2.410	.001	.007	3	1
UCEC	PACSIN2 →	+1.206	+1.547	.005	.004	3	1
UCEC	GNPNAT1 →	+0.976	+1.547	<.001	.004	3	1
UCEC	PPP4R3A →	+0.573	+1.547	.001	.004	3	1
UCEC	PSMD10 →	+0.629	+1.622	.009	.003	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 330 associations by consensus.

LINC00544 vs CARD10 — UCEC

Explore this scatter interactively →